FastQCFastQC Report
Tue 26 Sep 2023
EGAF00004174499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45110425
Sequences flagged as poor quality0
Sequence length32-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN7765041.7213404662004403No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG800280.1774046686547511No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA789900.17510364843603227No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG598610.13269881629357294No Hit
AGCCCGGGGCCGGCCTGGTGTCCGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGG495520.10984600566277085No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)