FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004174589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13452857
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2065521.5353764631557445No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG249880.18574493135547343No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA244380.18165658045722183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG201430.1497302766245118No Hit
CCCACGTGCAGGGGTGGCAGAAAGGAAAAGTGGGGGGAACAGACACGTGA158910.11812360749839236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)