FastQCFastQC Report
Wed 14 Sep 2022
EGAF00004174592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13578532
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2166021.595179802941879No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA401420.2956284228663305No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG310730.22883917053772826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)