FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004174608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12883919
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN600160.4658209974775532No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA318400.24712977472149583No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG291810.226491644351381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)