FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004174783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004174783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10931728
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN853030.780324940393687No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA206300.1887167335301427No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG197150.18034660211084652No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)