FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175032

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175032
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10029908
Sequences flagged as poor quality0
Sequence length35-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN362310.36122963440940836No Hit
CCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATG239730.23901515347897506No Hit
CACGTCCACATCCTTCTAGTGACACTTTCATGTCTTCTGGCCATTGCATC109760.10943270865495476No Hit
TCAACAGCCAAGCCAACACGCTGTTGCTCCAATACGTAAAAGGCACTTCTGTAGGGCTGGCATGAGTCAGTCA109360.10903390140766996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)