FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10673242
Sequences flagged as poor quality0
Sequence length35-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN288010.26984303363495366No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA202150.18939887243257483No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG149360.13993873651510946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)