FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11992755
Sequences flagged as poor quality0
Sequence length35-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN408090.34028044431825716No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA357560.2981466727203215No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG314570.2623000303099663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)