FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4018038
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN530851.3211671965272602No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA66390.16522989578495773No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG60590.15079498999262822No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)