FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4136968
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN456231.1028124945612343No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG80640.1949253656300943No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA69130.16710305711815995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)