FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4724662
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN260330.551002378582849No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA82230.17404419617741967No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG78570.16629761028407958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)