FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5381131
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN398720.7409594748761924No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG81880.1521613207335038No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA76570.14229350669961388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)