FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5738653
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN276190.481280188922383No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA117390.2045601990571655No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG93270.16252942981567278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)