FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4201266
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1195912.8465467313900144No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG75910.18068363202901222No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA70970.16892527157290207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)