FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3848998
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN131080.3405561655267163No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG87490.22730591182432416No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA79810.20735266684991782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)