FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4593168
Sequences flagged as poor quality0
Sequence length35-151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN174360.37960727759141405No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG107160.23330302745294748No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA94120.20491303605703076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)