FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5531911
Sequences flagged as poor quality0
Sequence length35-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN87700.1585347269686732No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA76270.1378727893489248No Hit
CCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATG69400.1254539344541154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)