FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4336217
Sequences flagged as poor quality0
Sequence length35-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN109240.25192466151947657No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA72550.1673117373969061No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG57120.13172772488092732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)