FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4672299
Sequences flagged as poor quality0
Sequence length35-150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN152970.3273977114906388No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG77160.16514354068521728No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA57690.12347240619660685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)