FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4374855
Sequences flagged as poor quality0
Sequence length35-150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG105700.2416080075796798No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA73670.16839415249191117No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN63850.14594769426643855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)