FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3801379
Sequences flagged as poor quality0
Sequence length35-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG79210.20837175140915967No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN57350.1508663040438746No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA51440.13531931438564793No Hit
GGCAATGACCACAGCAGCATGTCCAGCCTTCCACTGAGGCAGGCGTGTCT38080.10017417363540969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)