FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004175452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3320945
Sequences flagged as poor quality0
Sequence length35-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN472911.4240223791721935No Hit
CCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATG62710.1888317933600225No Hit
CACGTCCACATCCTTCTAGTGACACTTTCATGTCTTCTGGCCATTGCATC36860.11099250363977722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)