FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175461

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175461
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11836399
Sequences flagged as poor quality0
Sequence length32-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN3763743.1798015595790576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG696130.5881265070567493No Hit
AGCCCGGGGCCGGCCTGGTGTCCGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGG345080.2915413716621077No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG202310.1709219163700041No Hit
CGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGGAGCCCGGGGCCGGCCTGGTGTC195830.1654472783487613No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA188560.15930520760579295No Hit
GGCTCCACCGCCCCCCCAGCCCACGGTGTCACCTCGGCCCCGGACACCAGGCCGGCCCCG133550.11282992403348349No Hit
CCCCCTCTTTCTCAGTGCTCACTTGTGCAGAATTCGTCCCCGGATTACTT124660.10531919378520442No Hit
CCTGGGGGGACAGGTGGCTGGCTTTCACTGTGCTGTTTTGCCCTGGTGTG119340.10082458355788783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)