FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175502

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175502
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15980374
Sequences flagged as poor quality0
Sequence length35-151
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1553870.9723614728916857No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG393860.24646481990972177No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA368570.23063915775688354No Hit
CCACCGCCCCCCCAGCCCACGGTGTCACCTCGGCCCCGGACACCAGGCCGGCCCCGGGCT248130.1552717101614768No Hit
GGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGGAGCCCGGGGCCGGCCTGGTGTCC236440.14795648712602097No Hit
CGGGGCCGGCCTGGTGTCCGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGGAGCC188120.11771939755602717No Hit
TCAGGCGCGCCGCAAAACCCCGTCCCCATCCAAACCAAGCCCACACACCC167890.1050601193689209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)