FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5503397
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN513770.9335506778813158No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG83510.1517426418628349No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA83500.15172447126747352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)