FastQCFastQC Report
Thu 8 Sep 2022
EGAF00004175580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5468035
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN722121.320620661718515No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG140770.25744165865800056No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA132370.24207965018512137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)