FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3899095
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN152450.390988165202438No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA55890.14334095476001482No Hit
GTCGCTCATTCCTCAGCATAGATTTTATGAGGTCTTTGCACTCTTCATAT43030.11035894226737229No Hit
CCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATG40400.10361378730192519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)