FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004175645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3899095
Sequences flagged as poor quality0
Sequence length35-151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN150310.3854997121126826No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG56660.1453157719932446No Hit
GGCAATGACCACAGCAGCATGTCCAGCCTTCCACTGAGGCAGGCGTGTCT48280.1238236052212116No Hit
GTGGAAAAAAACACCATTGATACAACTGTCATTGTGAAAGTATGGAGGTC39120.1003309742388939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)