FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004175697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11662426
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN824670.70711702693762No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG303380.2601345551946053No Hit
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA301920.25888267158136735No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG234310.20091017083409576No Hit
AGCCCGGGGCCGGCCTGGTGTCCGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGG148300.12716050674190774No Hit
CGGGGCCGAGGTGACACCGTGGGCTGGGGGGGCGGTGGAGCCCGGGGCCGGCCTGGTGTC142490.12217869592484444No Hit
GGCAATGACCACAGCAGCATGTCCAGCCTTCCACTGAGGCAGGCGTGTCT133860.1147788633342668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)