FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004175776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8034774
Sequences flagged as poor quality0
Sequence length35-150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACTTGCAGTAGGAATATGACCCTAACCAGAAGACTCAGTGGATCCTTA316670.3941243400249964No Hit
CCTGAAGTCTTGCAGGACTCACTGGATAGATGTTATTCAACTCCTTCAGG152390.1896630819983238No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN108440.13496334806679067No Hit
CCATGAACTGGAGCTTTATCACCTTCACAATGGAGTACTCACTGCCTATG80500.10018950128528818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)