FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004175791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004175791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14099520
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA113250.010.902648140-144
GCCGTAT108850.010.655082140-144
TCGCCGT129900.010.647593140-144
GTCGCCG147900.010.510965140-144
CCGTATC103050.010.41592140-144
CGTATCA101200.010.093809140-144
TGGTCGC180000.09.981213140-144
GGTCGCC171900.09.848075140-144
GTGGTCG207550.09.350487140-144
CGGTGGT246250.08.372454140-144
ATCTCGG318200.08.299495140-144
GATCTCG329450.08.28285140-144
TCGGTGG274200.08.228368140-144
TCTCGGT299150.08.062242140-144
CTCGGTG300250.07.9943166140-144
GGTGGTC281200.07.0859194140-144
GTGTAGA544950.07.0008483140-144
TAGATCT447750.06.7186847140-144
AGATCTC452450.06.534256140-144
TGTAGAT610850.06.210201140-144
Produced by FastQC (version 0.11.5)