FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004176140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004176140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3458864
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTGCCTAGATCTCGTATG149580.432454123666036TruSeq Adapter, Index 10 (97% over 36bp)
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG37940.1096891927523025No Hit
ACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCT35890.1037623913516114No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC34750.10046651154830026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)