FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004176372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004176372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2618861
Sequences flagged as poor quality0
Sequence length50
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTCTCGTCATCTCGTATG385821.4732358838441597TruSeq Adapter, Index 1 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTCTCGTCATCTCGTAT46230.17652712381451327TruSeq Adapter, Index 1 (97% over 36bp)
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC28800.10997147233091026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)