FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004176602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004176602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2081101
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA31820.1528998352314472No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACGGACATCTCGTATG30300.14559600903560183TruSeq Adapter, Index 23 (97% over 36bp)
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG26580.1277208554510329No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG26070.12527022955637424No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC23960.11513136556082573No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA23510.11296904859495047No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT21340.10254187567061857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)