FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004176603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004176603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2377515
Sequences flagged as poor quality0
Sequence length50
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA36680.15427873220568536No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACGGACATCTCGTATG36240.15242806039078616TruSeq Adapter, Index 23 (97% over 36bp)
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG29850.12555125835168232No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG27840.11709705301543838No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA27120.11406868095469429No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC27080.11390043806243073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)