FastQCFastQC Report
Sun 15 May 2022
EGAF00004177068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526153379
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG42126630.8006530354336088TruSeq Adapter, Index 7 (97% over 34bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19306040.3669279866014127No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA9783700.18594767971641213No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8227580.15637227334047019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)