FastQCFastQC Report
Wed 16 Nov 2022
EGAF00004177072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529492530
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG44566170.8416770298912432TruSeq Adapter, Index 7 (97% over 34bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT19782530.37361301395507884No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10042920.18967066447566316No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8508680.16069499601816856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)