FastQCFastQC Report
Mon 7 Nov 2022
EGAF00004177073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529492530
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC46168870.8719456344360514Illumina Single End PCR Primer 1 (96% over 31bp)
GAATCCCCCTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT17691900.3341293596719863No Hit
GAATCCCCCTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA10934960.20651773878660762No Hit
GAATCCCCCTAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC8222050.15528169963039895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)