FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004177125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11024714
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGTTTCCTCCATGTTGGAGGGTGTCGGAATAGAGTCTGAGAAGCAG237130.21508947987222163No Hit
CTGGGAGTCATGCAGGAATGAATACTTCTGGTCCTTTGGGATATAGGTTT161390.14638928501909437No Hit
GTCAATGGCCAGCTGGTGCGCGCGATGGGCTTGGAGCATAGCGTGGTCAA122120.11076931338082784No Hit
GTCGGAATAGAGTCTGAGAAGCAGAAGGAGGTCTGGGAGTCATGCAGGAA117850.10689619703513396No Hit
GTCAAAAAGCCTGGATAAGGGAACGGTTTGGACGGCACCAGCCTCTTGAA114480.1038394283969634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)