FastQCFastQC Report
Mon 12 Sep 2022
EGAF00004177200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6882835
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGTTTCCTCCATGTTGGAGGGTGTCGGAATAGAGTCTGAGAAGCAG150280.21834026240640667No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT148150.2152456073696377TruSeq Adapter, Index 7 (97% over 38bp)
GTCAATGGCCAGCTGGTGCGCGCGATGGGCTTGGAGCATAGCGTGGTCAA87070.126503105188487No Hit
CTGGGAGTCATGCAGGAATGAATACTTCTGGTCCTTTGGGATATAGGTTT82750.12022662173363156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)