FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004177288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10467217
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG840260.8027539698469994TruSeq Adapter, Index 8 (97% over 35bp)
GTTGCGTTTCCTCCATGTTGGAGGGTGTCGGAATAGAGTCTGAGAAGCAG251330.2401115788466027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)