FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004177294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2076599
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGTTTCCTCCATGTTGGAGGGTGTCGGAATAGAGTCTGAGAAGCAG40120.19320051680656689No Hit
CTGGGAGTCATGCAGGAATGAATACTTCTGGTCCTTTGGGATATAGGTTT22520.10844655130817264No Hit
GTCGGAATAGAGTCTGAGAAGCAGAAGGAGGTCTGGGAGTCATGCAGGAA22290.1073389710772277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)