FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004177325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004177325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5125902
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGTTTCCTCCATGTTGGAGGGTGTCGGAATAGAGTCTGAGAAGCAG126520.24682485150906122No Hit
GTCGGAATAGAGTCTGAGAAGCAGAAGGAGGTCTGGGAGTCATGCAGGAA63640.12415375869456731No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTAT57960.11307278211717664TruSeq Adapter, Index 1 (97% over 36bp)
CTGGGAGTCATGCAGGAATGAATACTTCTGGTCCTTTGGGATATAGGTTT55610.10848822314589707No Hit
CTTTGGGATATAGGTTTCTTCAAACTCCTGGTAGGTGTCAATGGCCAGCT53440.1042548218830559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)