FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004186612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004186612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52684021
Sequences flagged as poor quality0
Sequence length25-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG946540.1796635833851786No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT614350.11661030960412076No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA561720.10662056337727144No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG538230.1021619059790444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)