FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004186623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004186623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58148469
Sequences flagged as poor quality0
Sequence length25-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGCTTTGCCTGGGTGCTGTTGGTACCAGGAGACATAGTTATAACCACC1200510.2064559945679739No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG700860.12052939863300613No Hit
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGCA662890.11399956205209805No Hit
GTTGCTTTGTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCT621580.10689533373612983No Hit
GTGAGGGTTGAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCAC620150.10664941152620888No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGG595320.10237930769939961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)