FastQCFastQC Report
Tue 13 Sep 2022
EGAF00004188073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004188073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7655654
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGAAGTAATCTCGTAT1233581.6113319645846065TruSeq Adapter, Index 7 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGAAGTAATCTCGTA493570.6447130447640398TruSeq Adapter, Index 7 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)