FastQCFastQC Report
Wed 14 Sep 2022
EGAF00004196431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31034891
Sequences flagged as poor quality0
Sequence length50
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT3656231.1781030582643257TruSeq Adapter, Index 19 (97% over 38bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA632570.20382542990081712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)