FastQCFastQC Report
Sat 1 Apr 2023
EGAF00004196443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30277964
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTAT1461250.48261171061568076TruSeq Adapter, Index 27 (97% over 39bp)
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA433410.1431437067565045No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG306650.1012782761747124No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)