FastQCFastQC Report
Sat 1 Apr 2023
EGAF00004196457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31387038
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTAT1023160.32598169983417996TruSeq Adapter, Index 3 (97% over 36bp)
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA322230.10266339882087631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)