FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004196517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004196517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33994273
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTAT2850160.8384235779950346TruSeq Adapter, Index 7 (97% over 35bp)
CCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC378500.11134228403707884No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGA350930.10323209441778619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)